Lab Algorithms for Download
A network generation tool using topological constraints. README for network generation and analysis scripts enclosed in package.
FOCIS (Feature Overlapper for Chromosomal Interval Subsets) performs an interval-based screen of a database of genomic features – ChIP-seq peaks, motif matches, and others – for overlap enrichment at a specific subset of genomic regions relative to a dataset-matched background. Follow the link below for more details:
A RINS package can be downloaded by clicking below. Included are all scripts, README, and virus reference file. This is a package recommended for advanced users only. To install, type tar -xzvf which will create a folder with the contents entitled rins_core. Once installation is complete, please verify that all paths in the configuration file match your computer environment, else execution of RINS will be unsuccessful.
A package including the above as well as the associated Bowtie and BLAST libraries/databases for running RINS on human sample data can be downloaded by visiting:
This link will take you download a very large file, which can be installed in the same way and will open a folder called rins on your computer. If you would like to use these libraries/databases without downloaded such a large package, they are freely accessible from the sources described in the README.